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Tax Return for Employees: 年末調整 vs 確定申告 Explained

Verified: April 2026 | Japan Life Guide

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Most employees in Japan have their taxes settled through 年末調整 (year-end adjustment) done by their employer in December. However, you are generally expected to file your own 確定申告 (individual tax return) if: your employer did not complete year-end adjustment, you had multiple employers, you want to claim medical expense deductions, or your annual salary exceeds ¥20 million. Filing is done online via eTax or at your local tax office between February 16 and March 15.

Legal Notice

This article provides general information only and does not constitute tax advice. Tax rules change annually. For your specific situation, consult a licensed tax accountant (税理士 / zeirishi) or your local tax office.

年末調整 vs 確定申告: Which Do You Need?

Aspect年末調整 (Year-End Adjustment)確定申告 (Individual Tax Return)
Who does itYour employerYou (the individual)
WhenNovember-DecemberFeb 16 – Mar 15 (following year)
WhereAt your workplaceTax office, eTax online, or by mail
CoversStandard deductions, insurance premiums, dependentsAll income sources, medical expenses, donations, foreign tax credits

When You typically need to File 確定申告

  • Year-end adjustment not done — you left your job mid-year, or your employer did not perform it
  • Multiple employers — you had two or more jobs simultaneously during the tax year
  • Side income over ¥200,000 — freelance work, rental income, stock gains, etc.
  • Annual salary over ¥20 million
  • Leaving Japan permanently — you are generally expected to file before departing
  • First year in Japan — if you arrived mid-year and your employer did not do year-end adjustment

When You SHOULD File (to Get Money Back)

Even if not required, you may get a refund by filing:

  • Medical expenses over ¥100,000 — claim 医療費控除 (medical expense deduction)
  • Hometown tax (ふるさと納税) — if you donated to more than 5 municipalities
  • Housing loan deduction — first year requires 確定申告 (subsequent years via 年末調整)
  • Foreign tax credit — if you paid taxes on overseas income

Step-by-Step eTax Filing Guide

1
Gather documents — 源泉徴収票 (withholding slip) from employer, My Number card, receipts for deductions
2
Access eTax — go to www.keisan.nta.go.jp (available in English, Chinese, Portuguese, Spanish, Vietnamese, Filipino, and Nepali)
3
Log in with My Number card — use the MynaPortal app on your smartphone as a card reader, or use an IC card reader
4
Enter income details — input numbers from your 源泉徴収票 (the system auto-retrieves if linked to MynaPortal)
5
Add deductions — medical expenses, insurance premiums, ふるさと納税, housing loan, etc.
6
Submit electronically — review the calculated tax/refund amount and submit. Refunds are deposited to your bank account in about 1-2 months.

Special Section: ALTs & English Teachers

Common situations for ALTs (Assistant Language Teachers) and English teachers:

SituationDo You Need to File?
JET Programme (single employer, year-end adjustment done)No — unless claiming extra deductions
Dispatch ALT (employer does year-end adjustment)No — unless you have side income
Private lessons on the side (over ¥200,000/year)Yes — typically need to file 確定申告
Left mid-contract (no year-end adjustment)Yes — likely due a refund
Multiple part-time teaching jobsYes — typically need to combine all income

Tip: If you left Japan mid-year without filing, you may be owed a refund. You can appoint a tax representative (納税管理人) to file on your behalf after departure.

Key Deadlines

EventDeadline
年末調整 forms submitted to employerLate November (employer's deadline)
確定申告 filing periodFebruary 16 – March 15
Refund-only filing (還付申告)From January 1 (up to 5 years retroactive)
Resident tax notice arrivesJune (based on previous year's income)

Frequently Asked Questions

Q: Is eTax available in English?

A: The NTA's online filing system at keisan.nta.go.jp has multilingual support including English. Some sections may still be in Japanese, but the input forms and instructions are largely translated.

Q: What is a 源泉徴収票 and where do I get it?

A: A 源泉徴収票 (withholding tax slip) is a summary of your annual income and taxes withheld. Your employer typically need to issue it by January 31 of the following year. If they have not, request it — you need it for 確定申告.

Q: Can I file 確定申告 at the tax office in person?

A: Yes. Tax offices open special filing counters from mid-February to mid-March. Staff can help you fill out forms. Bring your My Number card, 源泉徴収票, and any deduction receipts. Expect long waits during peak periods.

Need help with your tax return?

A licensed tax accountant (税理士) can help you identify deductions and file your return correctly. Many offer English-language services.

Disclaimer

※ This article provides general information only and does not constitute tax advice. Tax rules change annually. Please verify current regulations at your local tax office or consult a licensed tax accountant (税理士).

Last updated: April 2026.

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FAQ

Is eTax available in English?

The NTA's online filing system at keisan.nta.go.jp has multilingual support including English. Some sections may still be in Japanese, but the input forms and instructions are largely translated.

What is a 源泉徴収票 and where do I get it?

A 源泉徴収票 (withholding tax slip) is a summary of your annual income and taxes withheld. Your employer must issue it by January 31 of the following year.

Can I file 確定申告 at the tax office in person?

Yes. Tax offices open special filing counters from mid-February to mid-March. Staff can help you fill out forms. Bring your My Number card, 源泉徴収票, and any deduction receipts.

What to do next →

After this procedure, you typically need these:

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※ The information on this site is for reference only. Please confirm procedure details at your local municipal office.